Provides files and formats for handling sequence data. More...

Collaboration diagram for Sequence File:

Classes
struct	seqan3::format_embl
	The EMBL format (tag). More...

struct	seqan3::format_fasta
	The FastA format (tag). More...

struct	seqan3::format_fastq
	The FastQ format. (tag) More...

struct	seqan3::format_genbank
	The GenBank format (tag). More...

class	seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
	A class for reading sequence files, e.g. FASTA, FASTQ ... More...

struct	seqan3::sequence_file_input_default_traits_aa
	A traits type that specifies input as amino acids. More...

struct	seqan3::sequence_file_input_default_traits_dna
	The default traits for seqan3::sequence_file_input. More...

class	seqan3::sequence_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
	A class for writing sequence files, e.g. FASTA, FASTQ ... More...

interface	seqan3::SequenceFileInputFormat
	The generic concept for sequence file in formats. More...

interface	seqan3::SequenceFileInputTraits
	The requirements a traits_type for seqan3::sequence_file_input must meet. More...

interface	seqan3::SequenceFileOutputFormat
	The generic concept for sequence file out formats. More...

struct	std::tuple_element< elem_no, seqan3::sequence_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > >
	Obtains the type of the specified element. More...

struct	std::tuple_size< seqan3::sequence_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > >
	Provides access to the number of elements in a tuple as a compile-time constant expression. More...

Detailed Description

Provides files and formats for handling sequence data.

Classes