Provides files and formats for handling structure data. More...

Collaboration diagram for Structure File:

Classes
struct	seqan3::format_vienna
	The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More...

class	seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_, stream_char_type_ >
	A class for reading structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More...

struct	seqan3::structure_file_input_default_traits_aa
	A traits type that specifies input as amino acids. More...

struct	seqan3::structure_file_input_default_traits_rna
	The default traits for seqan3::structure_file_input. More...

struct	seqan3::structure_file_input_options< seq_legal_alphabet, structured_seq_combined >
	The options type defines various option members that influence the behaviour of all or some formats. More...

class	seqan3::structure_file_output< selected_field_ids_, valid_formats_, stream_char_type_ >
	A class for writing structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More...

struct	seqan3::structure_file_output_options
	The options type defines various option members that influence the behaviour of all or some formats. More...

interface	seqan3::StructureFileInputFormat
	The generic concept for structure file in formats. More...

interface	seqan3::StructureFileInputTraits
	The requirements a traits_type for seqan3::structure_file_input must meet. More...

interface	seqan3::StructureFileOutputFormat
	The generic concept for structure file out formats. More...

struct	std::tuple_element< elem_no, seqan3::structure_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > >
	Obtains the type of the specified element. More...

struct	std::tuple_size< seqan3::structure_file_input< traits_type, selected_field_ids, valid_formats, stream_char_t > >
	Provides access to the number of elements in a tuple as a compile-time constant expression. More...

Detailed Description

Provides files and formats for handling structure data.

Classes

Detailed Description