seqan3::align_cfg::output_begin_position Class Reference

Configures the alignment result to output the begin positions. More...

#include <seqan3/alignment/configuration/align_config_output.hpp>

Inheritance diagram for seqan3::align_cfg::output_begin_position:

Public Member Functions
Constructor, destructor and assignment
constexpr	output_begin_position ()=default
	Defaulted.
constexpr	output_begin_position (output_begin_position const &)=default
	Defaulted.
constexpr	output_begin_position (output_begin_position &&)=default
	Defaulted.
constexpr output_begin_position &	operator= (output_begin_position const &)=default
	Defaulted.
constexpr output_begin_position &	operator= (output_begin_position &&)=default
	Defaulted.
	~output_begin_position ()=default

Detailed Description

Configures the alignment result to output the begin positions.

This option forces the alignment to compute and output the begin positions of the aligned sequences. The begin positions must not be identical to the begin position of the original source sequences. For example, the optimal local alignment might only represent a slice of the original sequences. The begin positions denote the begin of the alignment within the original sequences, i.e. the positions of the first aligned characters.

If this option is not set in the alignment configuration, accessing the begin positions via the seqan3::alignment_result object is forbidden and will lead to a compile time error.

Example

#include <seqan3/alignment/configuration/align_config_output.hpp>
 
int main()
{
    // Compute only the begin position of the aligned sequences.
    seqan3::configuration cfg = seqan3::align_cfg::output_begin_position{};
}

See also

seqan3::align_cfg::output_score

seqan3::align_cfg::output_end_position

seqan3::align_cfg::output_alignment

seqan3::align_cfg::output_sequence1_id

seqan3::align_cfg::output_sequence2_id

Constructor & Destructor Documentation

~output_begin_position()

seqan3::align_cfg::output_begin_position::~output_begin_position ( )

default

Defaulted.

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The documentation for this class was generated from the following file:

• seqan3/alignment/configuration/align_config_output.hpp