Provides files and formats for handling structure data. More...
Classes | |
class | seqan3::format_vienna |
The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More... | |
class | seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ > |
A class for reading structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More... | |
struct | seqan3::structure_file_input_default_traits_aa |
A traits type that specifies input as amino acids. More... | |
struct | seqan3::structure_file_input_default_traits_rna |
The default traits for seqan3::structure_file_input. More... | |
interface | structure_file_input_format |
The generic concept for structure file in formats. More... | |
struct | seqan3::structure_file_input_options< seq_legal_alphabet, structured_seq_combined > |
The options type defines various option members that influence the behaviour of all or some formats. More... | |
interface | structure_file_input_traits |
The requirements a traits_type for seqan3::structure_file_input must meet. More... | |
class | seqan3::structure_file_output< selected_field_ids_, valid_formats_ > |
A class for writing structured sequence files, e.g. Stockholm, Connect, Vienna, ViennaRNA bpp matrix ... More... | |
interface | structure_file_output_format |
The generic concept for structure file out formats. More... | |
struct | seqan3::structure_file_output_options |
The options type defines various option members that influence the behaviour of all or some formats. More... | |
Provides files and formats for handling structure data.