79 constexpr
aa20() noexcept = default;
80 constexpr
aa20(
aa20 const &) noexcept = default;
82 constexpr
aa20 & operator=(
aa20 const &) noexcept = default;
83 constexpr
aa20 & operator=(
aa20 &&) noexcept = default;
84 ~
aa20() noexcept = default;
129 ret[
static_cast<rank_type>(rank_to_char_table[rnk])] = rnk;
133 ret[
'B'] = ret[
'D']; ret[
'b'] = ret[
'D'];
134 ret[
'J'] = ret[
'L']; ret[
'j'] = ret[
'L'];
135 ret[
'O'] = ret[
'L']; ret[
'o'] = ret[
'L'];
136 ret[
'U'] = ret[
'C']; ret[
'u'] = ret[
'C'];
137 ret[
'X'] = ret[
'S']; ret[
'x'] = ret[
'S'];
138 ret[
'Z'] = ret[
'E']; ret[
'z'] = ret[
'E'];
147 return rank_to_char_table[rank];
154 return char_to_rank_table[
static_cast<index_t
>(chr)];
172 inline namespace literals
188 constexpr
aa20 operator""_aa20(
char const c) noexcept
204 inline aa20_vector operator""_aa20(
char const *
const s,
size_t const n)
209 for (
size_t i = 0; i < n; ++i)
210 r[i].assign_char(s[i]);
Provides seqan3::aminoacid_alphabet.
Provides seqan3::aminoacid_base.
The canonical amino acid alphabet.
Definition: aa20.hpp:64
constexpr aa20() noexcept=default
Defaulted.
A CRTP-base that makes defining a custom alphabet easier.
Definition: alphabet_base.hpp:81
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition: alphabet_base.hpp:104
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:211
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:276
std::conditional_t< std::same_as< char_t, void >, char, char_t > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:96
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids.
Definition: aminoacid_base.hpp:32
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:81