header.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/io/sam_file/header.hpp>
 
namespace seqan3
{
template <std::ranges::forward_range ref_ids_type = std::deque<std::string>>
#if defined(__cpp_deduction_guides) && __cpp_deduction_guides >= 201907L
using alignment_file_header SEQAN3_DEPRECATED_310 = sam_file_header<ref_ids_type>;
#else // defined(__cpp_deduction_guides) && __cpp_deduction_guides >= 201907L
// This is a workaround for pre-c++20 as CTAD don't work on type aliases.
struct SEQAN3_DEPRECATED_310 alignment_file_header :
    public sam_file_header<ref_ids_type>
{
    using sam_file_header_t = sam_file_header<ref_ids_type>;
    using sam_file_header_t::sam_file_header_t;
    using sam_file_header_t::operator=;
};
 
template <typename ...args_t>
alignment_file_header(args_t && ...args) ->
    alignment_file_header<std::remove_reference_t<decltype(sam_file_header{std::forward<args_t>(args)...}.ref_ids())>>;
#endif // defined(__cpp_deduction_guides) && __cpp_deduction_guides >= 201907L
 
} // namespace seqan3
 
SEQAN3_DEPRECATED_HEADER("This header is deprecated and will be removed in SeqAn-3.1.0 Please #include <seqan3/io/sam_file/header.hpp> instead.")