input.hpp File Reference

[DEPRECATED] Provides seqan3::sam_file_input and corresponding traits classes. More...

#include <seqan3/io/sam_file/input.hpp>
#include <seqan3/io/alignment_file/input_options.hpp>

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Classes
struct	seqan3::alignment_file_input< traits_type_, selected_field_ids_, valid_formats_ >

Namespaces
	seqan3
	The main SeqAn3 namespace.

Typedefs
template<typename ref_sequences_t = ref_info_not_given, typename ref_ids_t = std::deque<std::string>>
using	seqan3::alignment_file_input_default_traits = sam_file_input_default_traits< ref_sequences_t, ref_ids_t >

Detailed Description

[DEPRECATED] Provides seqan3::sam_file_input and corresponding traits classes.

Deprecated:

This header will be removed in 3.1.0; Please #include <seqan3/io/sam_file/input.hpp> instead.

Author

Svenja Mehringer <svenja.mehringer AT fu-berlin.de>