This is the complete list of members for seqan3::format_bam, including all inherited members.
file_extensions | seqan3::format_bam | inlinestatic |
format_bam()=default | seqan3::format_bam | |
format_bam(format_bam const &)=default | seqan3::format_bam | |
format_bam(format_bam &&)=default | seqan3::format_bam | |
operator=(format_bam const &)=default | seqan3::format_bam | |
operator=(format_bam &&)=default | seqan3::format_bam | |
read_alignment_record(stream_type &stream, sam_file_input_options< seq_legal_alph_type > const &options, ref_seqs_type &ref_seqs, sam_file_header< ref_ids_type > &header, seq_type &seq, qual_type &qual, id_type &id, offset_type &offset, ref_seq_type &ref_seq, ref_id_type &ref_id, ref_offset_type &ref_offset, align_type &align, cigar_type &cigar_vector, flag_type &flag, mapq_type &mapq, mate_type &mate, tag_dict_type &tag_dict, e_value_type &e_value, bit_score_type &bit_score) | seqan3::format_bam | inlineprotected |
write_alignment_record([[maybe_unused]] stream_type &stream, [[maybe_unused]] sam_file_output_options const &options, [[maybe_unused]] header_type &&header, [[maybe_unused]] seq_type &&seq, [[maybe_unused]] qual_type &&qual, [[maybe_unused]] id_type &&id, [[maybe_unused]] int32_t const offset, [[maybe_unused]] ref_seq_type &&ref_seq, [[maybe_unused]] ref_id_type &&ref_id, [[maybe_unused]] std::optional< int32_t > ref_offset, [[maybe_unused]] align_type &&align, [[maybe_unused]] cigar_type &&cigar_vector, [[maybe_unused]] sam_flag const flag, [[maybe_unused]] uint8_t const mapq, [[maybe_unused]] mate_type &&mate, [[maybe_unused]] tag_dict_type &&tag_dict, [[maybe_unused]] double e_value, [[maybe_unused]] double bit_score) | seqan3::format_bam | inlineprotected |
~format_bam()=default | seqan3::format_bam |