format_vienna.hpp File Reference

Provides the seqan3::format_vienna. More...

#include <seqan3/std/algorithm>
#include <cstdio>
#include <iterator>
#include <seqan3/std/ranges>
#include <stack>
#include <string>
#include <string_view>
#include <type_traits>
#include <vector>
#include <seqan3/alphabet/adaptation/char.hpp>
#include <seqan3/alphabet/concept.hpp>
#include <seqan3/alphabet/structure/wuss.hpp>
#include <seqan3/alphabet/views/char_to.hpp>
#include <seqan3/alphabet/views/to_char.hpp>
#include <seqan3/core/range/detail/misc.hpp>
#include <seqan3/core/range/type_traits.hpp>
#include <seqan3/io/detail/istreambuf_view.hpp>
#include <seqan3/io/detail/misc.hpp>
#include <seqan3/io/detail/take_line_view.hpp>
#include <seqan3/io/detail/take_until_view.hpp>
#include <seqan3/io/detail/take_view.hpp>
#include <seqan3/io/structure_file/detail.hpp>
#include <seqan3/io/structure_file/input_format_concept.hpp>
#include <seqan3/io/structure_file/input_options.hpp>
#include <seqan3/io/structure_file/output_format_concept.hpp>
#include <seqan3/io/structure_file/output_options.hpp>
#include <seqan3/utility/char_operations/predicate.hpp>
#include <seqan3/utility/detail/type_name_as_string.hpp>
#include <seqan3/utility/views/to.hpp>

Include dependency graph for format_vienna.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	seqan3::format_vienna
	The Vienna format (dot bracket notation) for RNA sequences with secondary structure. More...

Namespaces
	seqan3
	The main SeqAn3 namespace.

Detailed Description

Provides the seqan3::format_vienna.

Author

Jörg Winkler <j.winkler AT fu-berlin.de>