phred68solexa.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/alphabet/quality/phred_base.hpp>
 
namespace seqan3
{
 
class phred68solexa : public phred_base<phred68solexa, 68>
{
private:
    using base_t = phred_base<phred68solexa, 68>;
 
    friend base_t;
    friend base_t::base_t;
 
public:
    constexpr phred68solexa()                                   noexcept = default; 
    constexpr phred68solexa(phred68solexa const &)              noexcept = default; 
    constexpr phred68solexa(phred68solexa &&)                   noexcept = default; 
    constexpr phred68solexa & operator=(phred68solexa const &)  noexcept = default; 
    constexpr phred68solexa & operator=(phred68solexa &&)       noexcept = default; 
    ~phred68solexa()                                            noexcept = default; 
 
#ifdef SEQAN3_DEPRECATED_310
    SEQAN3_DEPRECATED_310 constexpr phred68solexa(phred_type const p)
    {
        assign_phred(p);
    }
#endif // SEQAN3_DEPRECATED_310
 
    // Inherit converting constructor
    using base_t::base_t;
 
    static constexpr phred_type offset_phred{-5};
 
    static constexpr char_type offset_char{';'};
};
 
#ifdef SEQAN3_DEPRECATED_310
using phred68legacy SEQAN3_DEPRECATED_310 = seqan3::phred68solexa;
#endif // SEQAN3_DEPRECATED_310
 
inline namespace literals
{
 
constexpr phred68solexa operator""_phred68solexa(char const c) noexcept
{
    return phred68solexa{}.assign_char(c);
}
 
inline std::vector<phred68solexa> operator""_phred68solexa(char const * s, std::size_t n)
{
    std::vector<phred68solexa> r;
    r.resize(n);
 
    for (size_t i = 0; i < n; ++i)
        r[i].assign_char(s[i]);
 
    return r;
}
 
#ifdef SEQAN3_DEPRECATED_310
SEQAN3_DEPRECATED_310 constexpr phred68solexa operator""_phred68legacy(char const c) noexcept
{
    return seqan3::operator""_phred68solexa(c);
}
 
SEQAN3_DEPRECATED_310 inline std::vector<phred68solexa> operator""_phred68legacy(char const * s, size_t n)
{
    return seqan3::operator""_phred68solexa(s, n);
}
#endif // SEQAN3_DEPRECATED_310
 
} // inline namespace literals
 
} // namespace seqan3