cigar.hpp File Reference

Provides the seqan3::cigar alphabet. More...

#include <seqan3/std/charconv>
#include <seqan3/alphabet/adaptation/uint.hpp>
#include <seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp>
#include <seqan3/alphabet/composite/alphabet_tuple_base.hpp>
#include <seqan3/core/debug_stream/debug_stream_type.hpp>
#include <seqan3/utility/container/small_string.hpp>

Include dependency graph for cigar.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
class	seqan3::cigar
	The seqan3::cigar semialphabet pairs a counter with a seqan3::cigar::operation letter. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::literals
	The SeqAn namespace for literals.

Functions
template<typename char_t >
debug_stream_type< char_t > &	seqan3::operator<< (debug_stream_type< char_t > &s, cigar const c)
	Overload for the seqan3::debug_stream's operator.
Other literals
constexpr cigar::operation	seqan3::literals::operator""_cigar_operation (char const c) noexcept
	The seqan3::cigar::operation char literal. More...

Detailed Description

Provides the seqan3::cigar alphabet.

Author

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>