SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ > Member List

This is the complete list of members for seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, including all inherited members.

alignment_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
begin()seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
cigar_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
const_iterator typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
const_reference typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
difference_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
end() noexceptseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
field_ids typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
field_types typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
flag_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
front() noexceptseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
header()seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
header_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
id_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
iterator typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
mapq_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
mate_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
offset_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
operator=(sam_file_input const &)=deleteseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
operator=(sam_file_input &&)=defaultseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
optionsseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
quality_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
record_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
ref_id_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
ref_offset_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
ref_sequence_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
reference typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sam_file_input()=deleteseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sam_file_input(sam_file_input const &)=deleteseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sam_file_input(sam_file_input &&)=defaultseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sam_file_input(std::filesystem::path filename, selected_field_ids const &fields_tag=selected_field_ids{})seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
sam_file_input(stream_t &stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
sam_file_input(stream_t &&stream, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
sam_file_input(std::filesystem::path filename, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, selected_field_ids const &fields_tag=selected_field_ids{})seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
sam_file_input(stream_t &stream, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
sam_file_input(stream_t &&stream, typename traits_type::ref_ids &ref_ids, typename traits_type::ref_sequences &ref_sequences, file_format const &format_tag, selected_field_ids const &fields_tag=selected_field_ids{})seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >inline
sam_file_input(stream_type &&stream, file_format const &, selected_field_ids const &) -> sam_file_input< typename sam_file_input<>::traits_type, selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &stream, file_format const &, selected_field_ids const &) -> sam_file_input< typename sam_file_input<>::traits_type, selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &&stream, file_format const &) -> sam_file_input< typename sam_file_input<>::traits_type, typename sam_file_input<>::selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &stream, file_format const &) -> sam_file_input< typename sam_file_input<>::traits_type, typename sam_file_input<>::selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(std::filesystem::path path, ref_ids_t &, ref_sequences_t &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, typename sam_file_input<>::valid_formats >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(std::filesystem::path path, ref_ids_t &, ref_sequences_t &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, typename sam_file_input<>::valid_formats >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &&stream, ref_ids_t &, ref_sequences_t &, file_format const &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &stream, ref_ids_t &, ref_sequences_t &, file_format const &, selected_field_ids const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &&stream, ref_ids_t &, ref_sequences_t &, file_format const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
sam_file_input(stream_type &stream, ref_ids_t &, ref_sequences_t &, file_format const &) -> sam_file_input< sam_file_input_default_traits< std::remove_reference_t< ref_sequences_t >, std::remove_reference_t< ref_ids_t > >, typename sam_file_input<>::selected_field_ids, type_list< file_format > >seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >related
selected_field_ids typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sentinel typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
sequence_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
size_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
stream_char_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
traits_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
valid_formats typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
value_type typedefseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
~sam_file_input()=defaultseqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >