SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
debug_stream_alphabet.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
18
19namespace seqan3
20{
30template <typename char_t, alphabet alphabet_t>
35{
36 return s << to_char(l);
37}
38
39// forward declare seqan3::mask
40class mask;
41
48template <typename char_t, seqan3::semialphabet alphabet_t>
51 requires std::same_as<std::remove_cvref_t<alphabet_t>, mask>
53{
54 return s << (l == alphabet_t{} ? "UNMASKED" : "MASKED");
55}
56
58
59} // namespace seqan3
Core alphabet concept and free function/type trait wrappers.
A "pretty printer" for most SeqAn data structures and related types.
Definition: debug_stream_type.hpp:78
Implementation of a masked alphabet to be used for tuple composites..
Definition: mask.hpp:37
Provides seqan3::debug_stream and related types.
debug_stream_type< char_t > & operator<<(debug_stream_type< char_t > &stream, alignment_t &&alignment)
Stream operator for alignments, which are represented as tuples of aligned sequences.
Definition: debug_stream_alignment.hpp:101
constexpr auto to_char
Return the char representation of an alphabet object.
Definition: concept.hpp:387
Concept for output streams.
Stream concepts.
The main SeqAn3 namespace.
Definition: cigar_operation_table.hpp:2