SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
hit.hpp File Reference

Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best". More...

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Classes

class  seqan3::search_cfg::hit
 A dynamic configuration element to configure the hit strategy at runtime. More...
 
class  seqan3::search_cfg::hit_all
 Configuration element to receive all hits within the error bounds. More...
 
class  seqan3::search_cfg::hit_all_best
 Configuration element to receive all hits with the lowest number of errors within the error bounds. More...
 
class  seqan3::search_cfg::hit_single_best
 Configuration element to receive a single best hit with the lowest number of errors within the error bounds. More...
 
class  seqan3::search_cfg::hit_strata
 Configuration element to receive all hits with the best number of errors plus the given stratum. All hits are found with the fewest number of errors plus 'stratum'. More...
 

Namespaces

namespace  seqan3
 The main SeqAn3 namespace.
 
namespace  seqan3::search_cfg
 A special sub namespace for the search configurations.
 

Detailed Description

Provides the configuration to define the hit strategies "hit_strata", "hit_all", "hit_all_best", "hit_single_best".

Author
Christopher Pockrandt <christopher.pockrandt AT fu-berlin.de>
Rene Rahn <rene.rahn AT fu-berlin.de>
Svenja Mehringer <svenja.mehringer AT fu-berlin.de>