SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
all.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
32#pragma once
33
34#include <seqan3/io/sam_file/format_bam.hpp>
35#include <seqan3/io/sam_file/format_sam.hpp>
36#include <seqan3/io/sam_file/header.hpp>
37#include <seqan3/io/sam_file/input.hpp>
38#include <seqan3/io/sam_file/input_format_concept.hpp>
39#include <seqan3/io/sam_file/input_options.hpp>
40#include <seqan3/io/sam_file/output.hpp>
41#include <seqan3/io/sam_file/output_format_concept.hpp>
42#include <seqan3/io/sam_file/output_options.hpp>
43#include <seqan3/io/sam_file/record.hpp>
44#include <seqan3/io/sam_file/sam_flag.hpp>
45#include <seqan3/io/sam_file/sam_tag_dictionary.hpp>
format_bam.hpp
Provides the seqan3::format_bam.
format_sam.hpp
Provides the seqan3::format_sam.
header.hpp
Provides the seqan3::sam_file_header class.
output.hpp
Provides seqan3::sam_file_output and corresponding traits classes.
input.hpp
Provides seqan3::sam_file_input and corresponding traits classes.
input_format_concept.hpp
Provides seqan3::sam_file_input_format and auxiliary classes.
input_options.hpp
Provides seqan3::sam_file_input_options.
output_format_concept.hpp
Provides seqan3::sam_file_output_format and auxiliary classes.
output_options.hpp
Provides seqan3::sam_file_output_options.
record.hpp
Provides seqan3::sam_record.
sam_flag.hpp
Provides helper data structures for the seqan3::sam_file_output.
sam_tag_dictionary.hpp
Provides the seqan3::sam_tag_dictionary class and auxiliaries.