SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
phred94.hpp
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1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
16
17namespace seqan3
18{
19
43class phred94 : public phred_base<phred94, 94>
44{
45private:
48
50 friend base_t;
52 friend base_t::base_t;
54
55public:
59 constexpr phred94() noexcept = default;
60 constexpr phred94(phred94 const &) noexcept = default;
61 constexpr phred94(phred94 &&) noexcept = default;
62 constexpr phred94 & operator=(phred94 const &) noexcept = default;
63 constexpr phred94 & operator=(phred94 &&) noexcept = default;
64 ~phred94() noexcept = default;
65
66 // Inherit converting constructor
67 using base_t::base_t;
69
77 static constexpr phred_type offset_phred{0};
78
83 static constexpr char_type offset_char{'!'};
85};
86
87inline namespace literals
88{
89
103constexpr phred94 operator""_phred94(char const c) noexcept
104{
105 return phred94{}.assign_char(c);
106}
107
119inline std::vector<phred94> operator""_phred94(char const * s, std::size_t n)
120{
122 r.resize(n);
123
124 for (size_t i = 0; i < n; ++i)
125 r[i].assign_char(s[i]);
126
127 return r;
128}
130
131} // inline namespace literals
132
133} // namespace seqan3
A CRTP-base that makes defining a custom alphabet easier.
Definition: alphabet_base.hpp:57
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:165
Quality type for PacBio Phred scores of HiFi reads..
Definition: phred94.hpp:44
static constexpr char_type offset_char
The projection offset between char and rank score representation.
Definition: phred94.hpp:83
static constexpr phred_type offset_phred
The projection offset between Phred and rank score representation.
Definition: phred94.hpp:77
constexpr phred94() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the quality alphabets.
Definition: phred_base.hpp:31
int8_t phred_type
The integer representation of the quality score.
Definition: phred_base.hpp:40
The main SeqAn3 namespace.
Definition: cigar_operation_table.hpp:2
Provides seqan3::phred42 quality scores.
T resize(T... args)