SeqAn3 3.1.0
The Modern C++ library for sequence analysis.
range.hpp
Go to the documentation of this file.
1// -----------------------------------------------------------------------------------------------------
2// Copyright (c) 2006-2021, Knut Reinert & Freie Universität Berlin
3// Copyright (c) 2016-2021, Knut Reinert & MPI für molekulare Genetik
4// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
5// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
6// -----------------------------------------------------------------------------------------------------
7
13#pragma once
14
15#include <seqan3/std/ranges>
16
22
23namespace seqan3::detail
24{
38template <typename rng_t>
39SEQAN3_CONCEPT debug_stream_range_guard =
40 !std::same_as<std::remove_cvref_t<std::ranges::range_reference_t<rng_t>>,
41 std::remove_cvref_t<rng_t>> && // prevent recursive instantiation
42 // exclude null-terminated strings:
43 !(std::is_pointer_v<std::decay_t<rng_t>> &&
44 std::same_as<std::remove_cvref_t<std::ranges::range_reference_t<rng_t>>, char>);
45
57template <std::ranges::range rng_t, typename char_t>
58constexpr bool reference_type_is_streamable_v = false;
59
61template <std::ranges::range rng_t, typename char_t>
62 requires requires (std::ranges::range_reference_t<rng_t> l, debug_stream_type<char_t> s) { { s << l }; }
63constexpr bool reference_type_is_streamable_v<rng_t, char_t> = true;
65}
66
67namespace seqan3
68{
91template <typename char_t, std::ranges::input_range rng_t>
92inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, rng_t && r)
94 requires detail::debug_stream_range_guard<rng_t>
96{
97 static_assert(detail::reference_type_is_streamable_v<rng_t, char_t>,
98 "The reference type of the passed range cannot be streamed into the debug_stream.");
99
100 s << '[';
101 auto b = std::ranges::begin(r);
102 auto e = std::ranges::end(r);
103 if (b != e)
104 {
105 s << *b;
106 ++b;
107 }
108 while (b != e)
109 {
110 s << ',';
111 s << *b;
112 ++b;
113 }
114 s << ']';
115
116 return s;
117}
118
135template <typename char_t, sequence sequence_t>
136inline debug_stream_type<char_t> & operator<<(debug_stream_type<char_t> & s, sequence_t && sequence)
138 requires detail::debug_stream_range_guard<sequence_t> &&
139 (!detail::is_uint_adaptation_v<std::remove_cvref_t<std::ranges::range_reference_t<sequence_t>>>)
141{
142 for (auto && chr : sequence)
143 s << chr;
144 return s;
145}
146
148
149} // namespace seqan3
Provides alphabet adaptations for standard char types.
A "pretty printer" for most SeqAn data structures and related types.
Definition: debug_stream_type.hpp:78
Provides various transformation traits used by the range module.
Provides seqan3::debug_stream and related types.
debug_stream_type< char_t > & operator<<(debug_stream_type< char_t > &stream, alignment_t &&alignment)
Stream operator for alignments, which are represented as tuples of aligned sequences.
Definition: debug_stream_alignment.hpp:101
The generic concept for a (biological) sequence.
The main SeqAn3 namespace.
Definition: cigar_operation_table.hpp:2
The <ranges> header from C++20's standard library.
Additional non-standard concepts for ranges.
Provides alphabet adaptations for standard uint types.