61 constexpr aa27() noexcept = default;
62 constexpr
aa27(
aa27 const &) noexcept = default;
64 constexpr
aa27 & operator=(
aa27 const &) noexcept = default;
65 constexpr
aa27 & operator=(
aa27 &&) noexcept = default;
66 ~
aa27() noexcept = default;
74 'J',
'K',
'L',
'M',
'N',
'O',
'P',
'Q',
'R',
75 'S',
'T',
'U',
'V',
'W',
'X',
'Y',
'Z',
'*'};
87 ret[
static_cast<rank_type>(rank_to_char_table[rnk])] = rnk;
98 return rank_to_char_table[rank];
105 return char_to_rank_table[
static_cast<index_t
>(chr)];
124inline namespace literals
141constexpr aa27 operator""_aa27(
char const c)
noexcept
157inline aa27_vector operator""_aa27(
char const *
const s,
size_t const n)
162 for (
size_t i = 0; i < n; ++i)
163 r[i].assign_char(s[i]);
Provides seqan3::aminoacid_alphabet.
Provides seqan3::aminoacid_base.
The twenty-seven letter amino acid alphabet..
Definition: aa27.hpp:46
constexpr aa27() noexcept=default
Defaulted.
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition: alphabet_base.hpp:80
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
std::conditional_t< std::same_as< char, void >, char, char > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:72
A CRTP-base that refines seqan3::alphabet_base and is used by the amino acids.
Definition: aminoacid_base.hpp:32
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83