align_config_output.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/alignment/pairwise/alignment_result.hpp>
#include <seqan3/core/configuration/pipeable_config_element.hpp>
#include <seqan3/utility/concept.hpp>
 
namespace seqan3::align_cfg
{
 
class output_score : private pipeable_config_element
{
public:
    constexpr output_score() = default;                                 
    constexpr output_score(output_score const &) = default;             
    constexpr output_score(output_score &&) = default;                  
    constexpr output_score & operator=(output_score const &) = default; 
    constexpr output_score & operator=(output_score &&) = default;      
    ~output_score() = default;                                          
 
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_score};
};
 
class output_end_position : private pipeable_config_element
{
public:
    constexpr output_end_position() = default;                                        
    constexpr output_end_position(output_end_position const &) = default;             
    constexpr output_end_position(output_end_position &&) = default;                  
    constexpr output_end_position & operator=(output_end_position const &) = default; 
    constexpr output_end_position & operator=(output_end_position &&) = default;      
    ~output_end_position() = default;                                                 
 
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_end_position};
};
 
class output_begin_position : private pipeable_config_element
{
public:
    constexpr output_begin_position() = default;                                          
    constexpr output_begin_position(output_begin_position const &) = default;             
    constexpr output_begin_position(output_begin_position &&) = default;                  
    constexpr output_begin_position & operator=(output_begin_position const &) = default; 
    constexpr output_begin_position & operator=(output_begin_position &&) = default;      
    ~output_begin_position() = default;                                                   
 
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_begin_position};
};
 
class output_alignment : private pipeable_config_element
{
public:
    constexpr output_alignment() = default;                                     
    constexpr output_alignment(output_alignment const &) = default;             
    constexpr output_alignment(output_alignment &&) = default;                  
    constexpr output_alignment & operator=(output_alignment const &) = default; 
    constexpr output_alignment & operator=(output_alignment &&) = default;      
    ~output_alignment() = default;                                              
 
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_alignment};
};
 
class output_sequence1_id : private pipeable_config_element
{
public:
    constexpr output_sequence1_id() = default;                                        
    constexpr output_sequence1_id(output_sequence1_id const &) = default;             
    constexpr output_sequence1_id(output_sequence1_id &&) = default;                  
    constexpr output_sequence1_id & operator=(output_sequence1_id const &) = default; 
    constexpr output_sequence1_id & operator=(output_sequence1_id &&) = default;      
    ~output_sequence1_id() = default;                                                 
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_sequence1_id};
};
 
class output_sequence2_id : private pipeable_config_element
{
public:
    constexpr output_sequence2_id() = default;                                        
    constexpr output_sequence2_id(output_sequence2_id const &) = default;             
    constexpr output_sequence2_id(output_sequence2_id &&) = default;                  
    constexpr output_sequence2_id & operator=(output_sequence2_id const &) = default; 
    constexpr output_sequence2_id & operator=(output_sequence2_id &&) = default;      
    ~output_sequence2_id() = default;                                                 
 
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::output_sequence2_id};
};
 
} // namespace seqan3::align_cfg