alignment_algorithm_state.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2022, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2022, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/seqan3/blob/master/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/alignment/matrix/detail/alignment_optimum.hpp>
#include <seqan3/utility/concept.hpp>
#include <seqan3/utility/simd/concept.hpp>
 
namespace seqan3::detail
{
template <typename score_type>
    requires arithmetic<score_type> || simd_concept<score_type>
struct alignment_algorithm_state
{
    score_type gap_extension_score{};
    score_type gap_open_score{};
    alignment_optimum<score_type> optimum{};
 
    constexpr void reset_optimum() noexcept
    {
        optimum = alignment_optimum<score_type>{};
    }
};
 
template <typename score_type>
alignment_algorithm_state(score_type, score_type) -> alignment_algorithm_state<score_type>;
} // namespace seqan3::detail