75 static constexpr
char_type rank_to_char_table
76 [
alphabet_size]{
'=',
'A',
'C',
'M',
'G',
'R',
'S',
'V',
'T',
'W',
'Y',
'H',
'K',
'D',
'B',
'N'};
88 ret[rank_to_char_table[rnk]] = rnk;
89 ret[
to_lower(rank_to_char_table[rnk])] = rnk;
123 return rank_complement_table[rank];
132 return rank_to_char_table[rank];
139 return char_to_rank_table[
static_cast<index_t
>(chr)];
158inline namespace literals
175constexpr dna16sam operator""_dna16sam(
char const c)
noexcept
196 for (
size_t i = 0; i < n; ++i)
197 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition: alphabet_base.hpp:80
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
std::conditional_t< std::same_as< char, void >, char, char > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:72
A 16 letter DNA alphabet, containing all IUPAC symbols minus the gap and plus an equality sign ('=')....
Definition: dna16sam.hpp:48
constexpr dna16sam() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83
Provides seqan3::nucleotide_base.