76 constexpr dna3bs() noexcept = default;
96 ret[rank_to_char_table[rnk]] = rnk;
97 ret[
to_lower(rank_to_char_table[rnk])] = rnk;
142 return rank_complement_table[rank];
148 return rank_to_char_table[rank];
155 return char_to_rank_table[
static_cast<index_t
>(chr)];
174inline namespace literals
191constexpr dna3bs operator""_dna3bs(
char const c)
noexcept
210 for (
size_t i = 0; i < n; ++i)
211 r[i].assign_char(s[i]);
constexpr derived_type & assign_char(char_type const chr) noexcept
Assign from a character, implicitly converts invalid characters.
Definition: alphabet_base.hpp:163
detail::min_viable_uint_t< size - 1 > rank_type
The type of the alphabet when represented as a number (e.g. via to_rank()).
Definition: alphabet_base.hpp:80
static constexpr detail::min_viable_uint_t< size > alphabet_size
The size of the alphabet, i.e. the number of different values it can take.
Definition: alphabet_base.hpp:199
std::conditional_t< std::same_as< char, void >, char, char > char_type
The char representation; conditional needed to make semi alphabet definitions legal.
Definition: alphabet_base.hpp:72
The three letter reduced DNA alphabet for bisulfite sequencing mode (A,G,T(=C))..
Definition: dna3bs.hpp:61
constexpr dna3bs() noexcept=default
Defaulted.
A CRTP-base that refines seqan3::alphabet_base and is used by the nucleotides.
Definition: nucleotide_base.hpp:43
The main SeqAn3 namespace.
Definition: aligned_sequence_concept.hpp:29
constexpr char_type to_lower(char_type const c) noexcept
Converts 'A'-'Z' to 'a'-'z' respectively; other characters are returned as is.
Definition: transform.hpp:83
Provides seqan3::nucleotide_base.