24namespace seqan3::detail
39template <std::ranges::view urng_t>
40class view_translate_join :
public std::ranges::view_base
48 small_vector<translation_frames, 6> selected_frames{};
55 using reference = view_translate_single<std::views::all_t<std::ranges::range_reference_t<urng_t>>>;
57 using const_reference = reference;
59 using value_type = reference;
61 using size_type = std::ranges::range_size_t<std::ranges::range_reference_t<urng_t>>;
63 using difference_type = std::ranges::range_difference_t<std::ranges::range_reference_t<urng_t>>;
65 using iterator = detail::random_access_iterator<view_translate_join>;
67 using const_iterator = detail::random_access_iterator<view_translate_join const>;
71 template <
typename,
template <
typename...>
typename>
72 friend class detail::random_access_iterator_base;
75 static_assert(range_dimension_v<urng_t> == 2,
76 "This adaptor only handles range-of-range (two dimensions) as input.");
77 static_assert(std::ranges::viewable_range<urng_t>,
78 "The range parameter to views::translate_join cannot be a temporary of a non-view range.");
79 static_assert(std::ranges::viewable_range<std::ranges::range_reference_t<urng_t>>,
80 "The inner range of the range parameter to views::translate_join cannot be a temporary of "
82 static_assert(std::ranges::sized_range<urng_t>,
83 "The range parameter to views::translate_join must model std::ranges::sized_range.");
84 static_assert(std::ranges::sized_range<std::ranges::range_reference_t<urng_t>>,
85 "The inner range of the range parameter to views::translate_join must model "
86 "std::ranges::sized_range.");
87 static_assert(std::ranges::random_access_range<urng_t>,
88 "The range parameter to views::translate_join must model std::ranges::random_access_range.");
89 static_assert(std::ranges::random_access_range<std::ranges::range_reference_t<urng_t>>,
90 "The inner range of the range parameter to views::translate_join must model "
91 "std::ranges::random_access_range.");
93 "The range parameter to views::translate_join must be over a range over elements of "
94 "seqan3::nucleotide_alphabet.");
99 view_translate_join() noexcept = default;
100 constexpr view_translate_join(view_translate_join const & rhs) noexcept = default;
101 constexpr view_translate_join(view_translate_join && rhs) noexcept = default;
102 constexpr view_translate_join & operator=(view_translate_join const & rhs) noexcept = default;
103 constexpr view_translate_join & operator=(view_translate_join && rhs) noexcept = default;
104 ~view_translate_join() noexcept = default;
111 urange{std::move(_urange)},
132 template <
typename rng_t>
133 requires (!std::same_as<std::remove_cvref_t<rng_t>, view_translate_join>) && std::ranges::viewable_range<rng_t>
136 view_translate_join{std::views::all(std::forward<rng_t>(_urange)), _tf}
156 iterator
begin() noexcept
162 const_iterator
begin() const noexcept
181 iterator
end() noexcept
183 return {*
this,
size()};
187 const_iterator
end() const noexcept
190 return {*
this,
size()};
205 size_type
size() noexcept
211 size_type
size() const noexcept
235 reference operator[](size_type
const n)
238 size_type index_frame = n % selected_frames.size();
239 size_type index_urange = (n - index_frame) / selected_frames.size();
244 const_reference operator[](size_type
const n)
const
248 size_type index_frame = n % selected_frames.size();
249 size_type index_urange = (n - index_frame) / selected_frames.size();
256template <
typename urng_t>
258 -> view_translate_join<std::views::all_t<urng_t>>;
265struct translate_join_fn
270 return detail::adaptor_from_functor{*
this, tf};
278 template <std::ranges::range urng_t>
281 static_assert(range_dimension_v<urng_t> == 2,
282 "This adaptor only handles range-of-range (two dimensions) as input.");
283 static_assert(std::ranges::viewable_range<urng_t>,
284 "The range parameter to views::translate_join cannot be a temporary of a non-view range.");
285 static_assert(std::ranges::viewable_range<std::ranges::range_reference_t<urng_t>>,
286 "The inner range of the range parameter to views::translate_join cannot be a "
287 "temporary of a non-view range.");
288 static_assert(std::ranges::sized_range<urng_t>,
289 "The range parameter to views::translate_join must model std::ranges::sized_range.");
290 static_assert(std::ranges::sized_range<std::ranges::range_reference_t<urng_t>>,
291 "The inner range of the range parameter to views::translate_join must model "
292 "std::ranges::sized_range.");
293 static_assert(std::ranges::random_access_range<urng_t>,
294 "The range parameter to views::translate_join must model std::ranges::random_access_range.");
295 static_assert(std::ranges::random_access_range<std::ranges::range_reference_t<urng_t>>,
296 "The inner range of the range parameter to views::translate_join must model "
297 "std::ranges::random_access_range.");
299 "The range parameter to views::translate_join must be over a range over elements of "
300 "seqan3::nucleotide_alphabet.");
302 return detail::view_translate_join{std::forward<urng_t>(urange), tf};
306 template <std::ranges::range urng_t>
307 constexpr friend auto operator|(urng_t && urange, translate_join_fn
const & me)
309 return me(std::forward<urng_t>(urange));
Provides various transformation traits used by the range module.
constexpr auto translate_join
A view that translates nucleotide into aminoacid alphabet with 1, 2, 3 or 6 frames....
Definition: translate_join.hpp:381
constexpr auto translate_single
A view that translates nucleotide into aminoacid alphabet for one of the six frames.
Definition: translate.hpp:523
auto operator|(validator1_type &&vali1, validator2_type &&vali2)
Enables the chaining of validators.
Definition: validators.hpp:1124
constexpr size_t size
The size of a type pack.
Definition: traits.hpp:146
Specifies requirements of an input range type for which the const version of that type satisfies the ...
A concept that indicates whether an alphabet represents nucleotides.
The SeqAn namespace for views.
Definition: char_strictly_to.hpp:22
translation_frames
Specialisation values for single and multiple translation frames.
Definition: translate.hpp:62
@ forward_frame2
The third forward frame starting at position 2.
@ forward_frame0
The first forward frame starting at position 0.
@ reverse_frame0
The first reverse frame starting at position 0.
@ reverse_frame2
The third reverse frame starting at position 2.
@ forward_frame1
The second forward frame starting at position 1.
@ reverse_frame1
The second reverse frame starting at position 1.
A constexpr string implementation to manipulate string literals at compile time.
Provides seqan3::views::translate and seqan3::views::translate_single.