Class
Finder
Holds the haystack and a current search context.
Include Headers
seqan/find.h
Parameters
The haystack type. | |
The index-algorithm to search with (Optional). Default: The result of DefaultFinder Remarks: Leave empty for online pattern matching (see Pattern). |
Remarks
Use clear(finder) to reset a finder object and search from the beginning.
Specializations
Provides a fast filter alogrithm that guarantees to find all regions overlapping with potential ε-matches. An ε-match is a matching region of minimal length and an error rate of at most ε. |
Metafunctions
Type of the container given an iterator. | |
Type of an object that stores the difference between two iterators. | |
Returns the haystack type of a Finder type. | |
Type of the object a given object depends on. | |
Type of iterator objects that are used to traverse the container. | |
Type of the items in the container. |
Member Functions
Constructor |
Functions
The begin of a container. | |
Begin position of object in host. | |
Resets an object. | |
The end of a container. | |
End position of object in host. | |
Search for a Pattern in a Finder object. | |
Search the begin of an approximate match. | |
Returns the haystack of a Finder object. | |
Creates infix object. | |
The number of items/characters. | |
Position of an iterator. | |
Sets the haystack of a Finder object. |
Example Programs
See Also
SeqAn - Sequence Analysis Library - www.seqan.de