Class
FrequencyDistribution
Holds a collection of objects of a specific type, where each object represents
the frequency (absolute or relative probability) of a particular residue which is a member
of a fixed sequence alphabet.
Include Headers
seqan/find_motif.h
Parameters
The type of sequence which is considered. Metafunctions: Value | |
The type of probability distribution. Metafunctions: Spec Default: Remarks: It is preferable to use |
Remarks
The number of objects in FrequencyDistribution equals the size of the sequence alphabet.
Metafunctions
Type of iterator objects that are used to traverse the container. | |
Type of an object that represents a position in a container. | |
Type of an object that is suitable to hold size information. | |
The spec of a class. | |
Type of the items in the container. |
Functions
Counts the number of times each residue of a fixed sequence alphabet occurs in a given sequence. | |
Counts the number of times each residue of a fixed sequence alphabet occurs in a given set of sequences. | |
Adds a value of a specific type to each element of a given FrequencyDistribution object. | |
Determines the background letter frequencies in a given dataset | |
The begin of a container. | |
Resets an object. | |
Concatenates the background frequency with the profile for the motif component. | |
Coverts a residue to a frequency distribution (profile). | |
The end of a container. | |
The number of items/characters. | |
Logarithmizes each element of a given FrequencyDistribution object. | |
Determines the normalized frequencies. | |
Determines the residue position in a given FrequencyDistribution object with the maximum frequency. | |
Determines the sum of all frequencies in a given FrequencyDistribution object. |
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