Class
SeedSet
Manages seeds for local chaining and merging algorithms.
Include Headers
seqan/seeds.h
Parameters
Type that saves the positions and upper/lower bounds. Remarks: Positive and negative values are needed. | |
The Seed specialization. | |
The scoring sheme to use. |
Specializations
SeedSet that uses seeds without scores. | |
SeedSet that uses scored Seeds. |
Metafunctions
Type of iterator objects that are used to traverse the container. | |
The spec of a class. | |
Type of the items in the container. | |
Type of the items in the container. |
Member Functions
Constructor |
Functions
Adds a seed to an existing set. | |
Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. | |
The begin of a container. | |
The begin of a container. | |
The end of a container. | |
The end of a container. | |
Sets the maximal distance between two seed during a chaining process. | |
Sets the minimum length for a seed to be saved permanently. | |
Sets the maximal distance between two seed during a chaining process. | |
Sets the minimum length for a seed to be saved permanently. |
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