Function
bandedChainAlignment
Calculates a banded alignment around a chain of seeds.
Include Headers
seqan/seeds.h
Parameters
A chain of seeds. | |
Half of the width of the band. | |
The alignment where the result is stored. Types: Align | |
The score matrix. Types: Simple Score Remarks: Depending on the score matrix the Needleman-Wunsch or the Gotoh algorithm is used. For a description of the algorithm see the masters thesis of C. Kemena, Section 5.3.3 LAGAN Alignment. |
Return Values
The score of the alignment.
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