getAlignment

Function

getAlignment

Turns a HSP from a Blast search into an Alignment object.

getAlignment(hsp,alignment)

getAlignment(hsp,alignment,id0,id1)

Include Headers

seqan/blast.h

Parameters

hsp	A Blast HSP. Types: BlastHsp
alignment	An Alignment object to be filled. Types: Align, Alignment Graph
id0	The Id of the query sequence in the StringSet of the Alignment Graph.
id1	The Id of the hit sequence in the StringSet of the Alignment Graph.

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