Function
createCountArray
Builds an index on a StringSet storing how often a q-gram occurs in each sequence.
createCountsArray(counts, dir, bucketMap, stringSet, shape, stepSize)
Include Headers
seqan/index.h
Parameters
counts
The resulting list of pairs (seqNo,count).
dir
The resulting array that indicates at which position in the count table the corresponding a certain q-gram can be found.
bucketMap
Stores the q-gram hashes for the openaddressing hash maps, see indexBucketMap. If bucketMap is of the type Nothing the q-gram hash determines the bucket address in the index.
stringSet
The StringSet.
Types: StringSet
shape
The shape to be used.
Types: Shape
stepSize
Store every stepSize'th q-gram in the index.
Remarks
This function should not be called directly. Please use indexCreate or indexRequire. The resulting tables must have appropriate size before calling this function.
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