Function
extendSeeds
Extension of seeds.
extendSeeds(container, query, database, direction, MatchExtend)
extendSeeds(begin, end, query, database, direction, MatchExtend)
extendSeeds(container, scoreDropOff, scoreMatrix, query, database, direction, tag)
extendSeeds(begin, end, scoreDropOff, scoreMatrix, query, database, direction, tag)
Include Headers
seqan/seeds.h
Parameters
container
The container with the Seed objects to extend.
Types: Container
begin
Iterator pointing to the first value to add.
end
Iterator pointing just behind the last value to add.
query
The query sequence.
The database sequence.
Types: String, String
direction
Defines the direction in which the seed should be extended. 0 = left, 1 = right, 2 = both
scoreDropOff
The score drop after which the extension should stop. The extension stops if this value is exceeded.
scoreMatrix
The scoring sheme.
tag
The algorithm to use.
SeqAn - Sequence Analysis Library - www.seqan.de
 

Page built @2011/02/08 21:37:04