Function
getAlignment
Constructs a alignment from a ChainedSeed.
getAlignment(seed, align, query, database, scoreMatrix)
Include Headers
seqan/seeds.h
Parameters
seed
The alignment foundation.
align
An emtpy alignment object, that stores the constructed alignment.
Types: Align
query
The Query sequence.
Types: String
database
The database sequence.
Types: String
scoreMatrix
The scoring matrix.
Return Values
Score of the alignment.
SeqAn - Sequence Analysis Library - www.seqan.de
 

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