Function

getKmerSimilarityMatrix

Creates a matrix storing the number of common q-grams between all pairs of sequences.

Include Headers

seqan/index.h

Parameters

A q-gram index. Types: IndexQGram | |

The resulting q-gram similarity matrix. Types: Container | |

Contains sequence numbers if only a subset of sequences should be compared. Types: Container |

Remarks

SeqAn - Sequence Analysis Library - www.seqan.de