Refines (i.e. cuts into smaller parts) a set of pairwise segment matches in such a way that none of the segments partly overlap. They are either identical (fully overlapping) or non-overlapping.
The set of matches.
The scoring scheme used to score the refined matches (scores are attached to edges in the refined Alignment Graph).
Remarks: If no scoring scheme is given, all edges get weight 1.
The StringSet containing the sequences which the matches lie on.
The resulting refined set of matches stored in a graph.
Types: Alignment Graph
SeqAn - Sequence Analysis Library - www.seqan.de