Function
toSourcePosition
Transforms view to source position, if the view position is a gap, the original position of the next non-gap entry is returned.
toSourcePosition(gaps, pos)
Include Headers
seqan/align.h
Parameters
gap
A Gaps object, e.g. a row in the alignment.
Types: Gaps
pos
Position in the view sequence (this includes gaps) to get the original position for.
Remarks
If gap is a clipped alignment row, gaps in the clipped part will influence the result. The position pos is counted from the unclipped begin position.
Return Values
The position in the source sequence.
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