Class Specialization
Bfam
Backward Factor Automaton Matching algorithm.
Include Headers
seqan/find.h
Parameters
The needle type. Types: String | |
A tag that specifies the used automaton. Default: Bfam<Oracle> |
Remarks
To be used in combination with the default specialization of Finder.
Specialization of
Specializations
Backward Oracle Matching algorithm. | |
Backward Suffix Trie Matching algorithm. |
Metafunctions
Type of the object a given object depends on. (Pattern) | |
Returns the needle type of a Pattern type. (Pattern) | |
Returns the scoring scheme of an approximate searching algorithm. (Pattern) |
Functions
Search for a Pattern in a Finder object. (Pattern) | |
Search the begin of an approximate match. (Pattern) | |
The object a given object depends on. (Pattern) | |
Returns the needle of a Pattern object (not implemented for some online-algorithms). (Pattern) | |
Position of an iterator. (Pattern) | |
The scoring scheme used for finding or aligning. (Pattern) | |
Sets the needle of a Pattern object and optionally induces preprocessing. (Pattern) | |
Sets the scoring scheme used for finding or aligning. (Pattern) |
See Also
SeqAn - Sequence Analysis Library - www.seqan.de