Class Specialization
CMode
Represents the C ("constant") computation scheme for handling "zero" probabilities.
Pseudocount<TValue, CMode>
Include Headers
seqan/find_motif.h
Parameters
TValue
The type of sequence which is considered.
Types: AminoAcid, Dna
Remarks
The pseudocount is identical for each residue (pseudocount = epsilon/alphabet_size).
Specialization of
Metafunctions
ValueType of the items in the container. (Pseudocount)
Functions
convertSetOfPatternsToProfileConverts a set of sequence patterns into a profile. (Pseudocount)
normalizeDetermines the normalized frequencies. (Pseudocount)
SeqAn - Sequence Analysis Library - www.seqan.de
 

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