DnaQ

Class Specialization

DnaQ

Alphabet for DNA plus phred quality.

DnaQ

Remarks

The ValueSize of DnaQ is 4. The nucleotides are enumerated this way: 'A' = 0, 'C' = 1, 'G' = 2, 'T' = 3.

Objects of type DnaQ can be converted to various other types and vice versa.

DnaQ is typedef for SimpleType<char,DnaQ_>, while DnaQ_ is a helper specialization tag class.

Specialization of

Implements

Metafunctions

IsSimple	Tests type to be simple. (SimpleType)
Spec	The spec of a class. (SimpleType)
Value	Type of the items in the container. (SimpleType)

Functions

assign	Assigns one object to another object. (SimpleType)
assign	Assigns one object to another object. (SimpleType)
assignQualityValue	Assign quality to a character from an alphabet with integrated quality.
ordValue	Maps an alphabet 1-to-1 to the interval [0..ValueSize). (SimpleType)