Class Specialization
IndexWotd
An index based on a lazy suffix tree (see Giegerich et al., "Efficient implementation of lazy suffix trees").
Index
IndexWotd
IndexDfi
Index<TText, IndexWotd<> >
Include Headers
seqan/index.h
Parameters
TText
The text type.
Types: String
Remarks
The fibres (see Index and Fibre) of this index are a partially sorted suffix array (see WotdSA) and the wotd tree (see WotdDir).
Specialization of
Specializations
IndexDfiThe Deferred Frequency Index (see Weese and Schulz, "Efficient string mining under constraints via the deferred frequency index").
Metafunctions
FibreType of a specific index member (fibre). (Index)
SAValueThe default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index)
VertexDescriptorType of an object that represents a vertex descriptor.
Functions
beginThe begin of a container. (Index)
clearResets an object. (Index)
endThe end of a container. (Index)
getFibreReturns a specific Fibre of an Index object. (Index)
indexCreateCreates a specific Fibre. (Index)
indexRequireOn-demand creation of a specific Fibre. (Index)
indexSuppliedReturns whether a specific Fibre is present. (Index)
lengthThe number of items/characters. (Index)
setHaystackSets the haystack of a Finder object. (Index)
SeqAn - Sequence Analysis Library - www.seqan.de
 

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