Class Specialization
WildShiftAnd
Exact string matching with wildcards using bit parallelism. The Shift-And algorithm is applicable to search small patterns in texts using a small alphabet.
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WildShiftAnd | |||||||
Include Headers
seqan/find.h
Parameters
The needle type. Types: String |
Remarks
The supported wildcards are * (zero or more occurence), + (one or more occurences), ? (optional character), .
(every character), character classes (e.g. [a-z] ) and bounded repeats (e.g. {n,m} ).
After the find-Method returned the Finder will point to the last position of the occurence
We encourage the user to intialize the Pattern with a String<char> (setHost or the C'tor).
If you use for instance String <Dna> instead you won't be able to specify wildcards
Specialization of
Metafunctions
| Type of the object a given object depends on. (Pattern) | |
| Returns the needle type of a Pattern type. (Pattern) | |
| Returns the scoring scheme of an approximate searching algorithm. (Pattern) |
Functions
| Search for a Pattern in a Finder object. (Pattern) | |
| Search the begin of an approximate match. (Pattern) | |
| The object a given object depends on. (Pattern) | |
| Returns the needle of a Pattern object (not implemented for some online-algorithms). (Pattern) | |
| Position of an iterator. (Pattern) | |
| The scoring scheme used for finding or aligning. (Pattern) | |
| Sets the needle of a Pattern object and optionally induces preprocessing. (Pattern) | |
| Sets the scoring scheme used for finding or aligning. (Pattern) |
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de