Function
appendLocalMatch
Append a new local match to a LocalMatchStore
Include Headers
seqan/parse_lm.h
Parameters
The store to add the local match to. Types: LocalMatchStore | |
Numeric subject sequence identifier. | |
The textual name of the query sequence. Types: CharString | |
The begin position of the match in the subject. | |
The end position of the match in the subject. | |
Numeric query sequence identifier. | |
The textual name of the query sequence. Types: CharString | |
The begin position of the match in the query. | |
The end position of the match in the query. | |
Buffer with the cigar string of the local alignment. Types: CharString |
Remarks
Matches on the reverse-complement are encoded by the begin position being greater than the begin position.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de