Class Specialization
D2z AFScore
D2z computes a z-score of the inner product of kmer count vectors
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D2z AFScore | |||||||
Include Headers
seqan/alignment_free.h
Remarks
D2z can be used for alignment-free sequence comparison. The algorithm differs from the original implementation by the way masked sequences are handled
Specialization of
Data Members
| Order of the background model | |
| Size of the kmers |
Member Functions
| Constructor |
Functions
| Computes the pairwise similarity scores for a set of sequences (AFScore) |
SeqAn - Sequence Analysis Library - www.seqan.de