Class Specialization
IndexEsa
An index based on an enhanced suffix array.
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IndexEsa |
Include Headers
seqan/index.h
Parameters
The text type. Types: String |
Remarks
The fibres (see Index and Fibre) of this index are a suffix array (see EsaSA), a lcp table (see EsaLcp), etc.
This index can be accessed as a Suffix Tree using the VSTree Iterator classes.
Specialization of
Metafunctions
Type of a specific container member (fibre). (Index) | |
The default alphabet type of a suffix array, i.e. the type to store a position of a string or string set. (Index) | |
Type of an object that represents a vertex descriptor. |
Functions
The begin of a container. (Index) | |
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Resets an object. (Index) | |
Return the number of sequences in an index' underlying text. (Index) | |
The end of a container. (Index) | |
Returns a specific fibre of a container. (Index) | |
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Creates a specific Fibre. (Index) | |
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On-demand creation of a specific Fibre. (Index) | |
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Returns whether a specific Fibre is present. (Index) | |
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The number of items/characters. (Index) | |
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Initializes a vertex map. | |
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Sets the haystack of a Finder object. (Index) | |
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Example Programs
See Also
SeqAn - Sequence Analysis Library - www.seqan.de