Function
compactPairMatchIds
Renames pairMatchId sequentially beginning with 0.
Include Headers
seqan/store.h
Parameters
The fragment store. Types: FragmentStore |
Remarks
This function renames the pairMatchId in the alignedReadStore sequentially beginning with 0.
Two read alignments can be identified to be a pair match if they have the same pairMatchId .
Please note that paired reads not necessarily have to mapped as a pair match,
e.g. if they are on different contigs or have the same orientation or a wrong insert size.
Return Values
The number of pair matches.
Member of
SeqAn - Sequence Analysis Library - www.seqan.de