Function
getOccurrences
Returns all occurrences of the representative substring or a q-gram in the index text.
Include Headers
seqan/index.h
Parameters
A q-gram index. Types: IndexQGram | |
A shape object. Types: Shape | |
An iterator of a suffix tree. Types: VSTree Iterator |
Remarks
The necessary index tables are built on-demand via indexRequire if index is not const .
Return Values
All positions where the q-gram stored in shape occurs in the text (see QGramText).
If the type of index is TIndex the return type is Infix<Fibre<TIndex, QGramSA>::Type const>::Type .
All positions where the representative of iterator occurs in the text (see EsaText).
If iterator 's container type is TIndex the return type is Infix<Fibre<TIndex, EsaSA>::Type const>::Type .
Member of
Example Programs
SeqAn - Sequence Analysis Library - www.seqan.de