Class
AlignmentStatsStatistics about a tabular alignment.
Statistics about a tabular alignment.
Defined in  <seqan/align.h> 

Signature 
struct AlignmentStats;

Member Function Overview

AlignmentStats::AlignmentStats();
Constructor
Interface Function Overview

void clear(stats);
Resets all members to 0.
Member Variable Overview

int AlignmentStats::alignmentScore
The resulting alignment score. 
unsigned AlignmentStats::numGapExtensions
Number of gap extension events. 
unsigned AlignmentStats::numGapOpens
Number of gap open events. 
unsigned AlignmentStats::numMatches
Number of match (identity) events. 
unsigned AlignmentStats::numMismatches
Number of mismatch (not identity) events. 
unsigned AlignmentStats::numNegativeScores
Number of residues aligned with negative score. 
unsigned AlignmentStats::numPositiveScores
Number of residues aligned with positive score (0 is counted as positive).
See Also
Member Functions Detail
AlignmentStats::AlignmentStats();
Constructor
All members are initialized to 0.
Interface Functions Detail
void clear(stats);
Resets all members to 0.
Parameters
stats

AlignmentStats object to clear. 

Member Variables Detail
int AlignmentStats::alignmentScore
The resulting alignment score.
unsigned AlignmentStats::numGapExtensions
Number of gap extension events.
unsigned AlignmentStats::numGapOpens
Number of gap open events.
unsigned AlignmentStats::numMatches
Number of match (identity) events.
unsigned AlignmentStats::numMismatches
Number of mismatch (not identity) events.
unsigned AlignmentStats::numNegativeScores
Number of residues aligned with negative score.
unsigned AlignmentStats::numPositiveScores
Number of residues aligned with positive score (0 is counted as positive).