Class ContigFile
Represents a file containing contigs.

Defined in <seqan/store.h>
Signature template <[typename TSpec]> class ContigFile;

Template Parameters

TSpec The specializing type. Default: void.

Member Variable Overview

Detailed Description

Value type of contigFileStore string.

Member Variables Detail

CharString ContigFile::fileName

Contig file name.

TId ContigFile::firstContigId

The contigId of the first sequence in the file. Subsequent contig sequences have an increasing contigId.

AutoSeqFormat ContigFile::format

Stores the contig file format, auto-detect in loadContigs.