Class PigeonholeParameters
Parameters for the pigeonhole filter algorithm.

Defined in <seqan/index/find_pigeonhole.h>
Signature struct PigeonholeParameters;

Member Function Overview

Member Variable Overview

See Also

Member Functions Detail


Default constructor.

Initializes all member variables, default values are given in the variable documentation.

Member Variables Detail

bool PigeonholeParameters::debug

Whether to print debug information, defaults to false.

unsigned PigeonholeParameters::delta

Delta length, becomes index step site; defaults to 0.

A value of 0 means that the delta will be auto-detected.

unsigned PigeonholeParameters::overlap

Overlap length of adjacent q-grams, default is to use non-overlappling q-grams (= 0).

bool PigeonholeParameters::printDots

Whether to print dots for the scanning progress, defaults to false.