Class SequenceOutputOptions
Configuration for writing sequence (FASTA/FASTQ) files.

Defined in <seqan/seq_io.h>
Signature struct SequenceOutputOptions;

Member Function Overview

Member Variable Overview

Detailed Description

This struct is used for the configuration of writing out FASTA and FASTQ files.

Member Functions Detail

explicit SequenceOutputOptions::SequenceOutputOptions([lineLength[, qualMeta]]);



lineLengths int with the line length, defauls to -1.
qualMeta bool flag whether to write out the meta text after the + in FASTQ.

Member Variables Detail

int SequenceOutputOptions::lineLength

Length of the lines when writing out.

Set to -1 for default behaviour (no line break for FASTQ, line length of 70 for FASTA) and 0 for disabling line breaks.

bool SequenceOutputOptions::qualMeta

Whether or not to write the meta information into the "+" line before the qualities (interpreted for FASTQ only). Default is false.