Class
VcfIOContextThe I/O context to use for VCF I/O.
The I/O context to use for VCF I/O.
Defined in | <seqan/vcf_io.h> |
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Signature |
class VcfIOContext;
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Member Function Overview
Member Variable Overview
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TNamesPtr VcfIOContext::sampleNames
Names of the samples, pointer to StringSet of CharString. -
TNameStoreCache VcfIOContext::sampleNamesCache
Name store cache for the sample names, NameStoreCache of CharString. -
TNamesPtr VcfIOContext::sequenceNames
Names of the reference sequences, pointer to StringSet of CharString. -
TNameStoreCache VcfIOContext::sequenceNamesCache
Name store cache for of the reference names, NameStoreCache of CharString.
Detailed Description
VcfIOContext objects store the names of (and provide a cache for) reference and sample names. StringSet of CharString are used for the name stores.
Member Functions Detail
VcfIOContext::VcfIOContext();
VcfIOContext::VcfIOContext(sequenceNames, sampleNames);
Constructor.
Default constructor or construction with references to sequence and sample names.
Member Variables Detail
TNamesPtr VcfIOContext::sampleNames
Names of the samples, pointer to StringSet of CharString.
TNameStoreCache VcfIOContext::sampleNamesCache
Name store cache for the sample names, NameStoreCache of CharString.
TNamesPtr VcfIOContext::sequenceNames
Names of the reference sequences, pointer to StringSet of CharString.
TNameStoreCache VcfIOContext::sequenceNamesCache
Name store cache for of the reference names, NameStoreCache of CharString.