fn() assignCroppedSeqIdExtracts the sequence id up to the first whitespace of a sequence file fragment.
Extracts the sequence id up to the first whitespace of a sequence file fragment.
Defined in | <seqan/file> |
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Signature |
void assignCroppedSeqId(id, seqFragment, formatTag);
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Parameters
id
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The resulting cropped sequence id of the fragment (e.g. Fasta ID). The resulting id contains no whitespaces. Type: CharString. |
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seqFragment
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A sequence file fragment. Type: SequenceConcept. |
formatTag
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A file format tag. Type: FileFormatTag. |
Detailed Description
After calling split on a ConcatDirectStringSet to divide a file into fragments, this function can be used to extract the sequence id up to the first whitespace of every fragment in the StringSet.